Hit-Count (reads) of an array in Java

For evaluating an algorithm I have to count how often the items of a byte-array are read/accessed. The byte-array is filled with the contents of a file and my algorithm can skip over many of the bytes in the array (like for example the Boyer–Moore string search algorithm). I have to find out how often an item is actually read. This byte-array is passed around to multiple methods and classes.For evaluating an algorithm I have to count how